Structured Metadata Collection´
We promote the collection, conversion, and analysis of experimental metadata, ensuring that your research data is well-organized, FAIR-compliant, and primed for broad reuse.
We are designing meta data templates available as Excel sheets in the Cloud and on github to collect experimental metadata in a structured way. Each Excel table will be attached to the project folder, ensuring that the metadata is consistently documented from the outset of your project. We follow the guidelines of NFDI microbioata.
Data Reuse & Integration
Our metadata files are designed not only for effective data management but also to facilitate extensive data reuse. The comprehensive metadata will include essential information such as:
- Experimental Pipeline Details: Capture experimental design, sample characteristics, and processing methods essential for replicating and reusing data in your experimental workflows.
- Knowledge Graph Integration: Feed into a knowledge graph that organizes data relationships, supporting advanced queries and insights.
- Data Overview & Customized Downloads: Offer a summarized view of your data along with options for tailored downloads based on specific metadata criteria.
- Integration with External Databases: Enable seamless injection of metadata into prominent databases and platforms like the Single Cell Atlas, ArrayExpress, and Gene Expression Omnibus, broadening the scope of data sharing and reuse.
What’s in the Pipeline?
Conversion to Machine-Readable Formats
To maximize interoperability, tools will automatically convert the collected metadata into machine-readable formats, such as XML. This conversion enables seamless data integration and further processing.
DeepMeta Search Tool
To enhance metadata accessibility, we are also developing a DeppMeta search tool within Nextcloud. This tool will allow users to search, customize, and generate statistics from metadata files, providing valuable insights for your research.
Metadata Generator App
Alongside the Excel templates, a third-party metadata generator app is being developed within Nextcloud. This app will offer an intuitive interface for generating structured metadata that meets our project standards.
For any inquiries or suggestions, please contact the project team.